| Basic Information | |
|---|---|
| Taxon OID | 3300003375 Open in IMG/M |
| Scaffold ID | JGI26470J50227_1004970 Open in IMG/M |
| Source Dataset Name | Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3767 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (55.56%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Trout Bog Lake, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.0409 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F064339 | Metagenome | 128 | N |
| F096492 | Metagenome | 104 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI26470J50227_10049702 | F096492 | N/A | MAIARFEQINVNTVTNGVDSIGQQTTTITLWFATRALVQDVRDAAQISRDDRTYTKNVKFTLNFTPNTQTMSMNQSHYSISWRGQDYRINDVMESNDRMNVSFLCYRNAPSVAV* |
| JGI26470J50227_10049707 | F064339 | GGA | MNQLANAFGQKFTENKDSLRIKSFELNGHTFKVKVPLTSETDAMFERVKIIDEAKAQKYYEDMSKEFLDNRAKYETDPDIKYLDNDIEVKGTSIKETSRNKVLTENRITELVRLLVPENKDFDMASITYADIEELFPFSIQMELIEQINSVISPNYTATKGK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |