Scaffold JGI26470J50227

Basic Information
Taxon OID	3300003375 Open in IMG/M
Scaffold ID	JGI26470J50227_1000932 Open in IMG/M
Source Dataset Name	Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003375 Open in IMG/M

Scaffold ID

JGI26470J50227_1000932 Open in IMG/M

Source Dataset Name

Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11047
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (93.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

11047

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (93.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location
Location Name	Trout Bog Lake, Wisconsin, USA
Coordinates	Lat. (^o)	46.0409	Long. (^o)	-89.686	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Trout Bog Lake, Wisconsin, USA

Coordinates

Lat. (^o)

46.0409

Long. (^o)

-89.686

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021233	Metagenome	219	Y
F029972	Metagenome	186	Y
F037031	Metagenome / Metatranscriptome	168	Y
F052345	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26470J50227_100093211	F021233	GGA	MTLNKGIKRGLEGLTEPELGPSHDDKFGELHEFAVRAFTWKTKPEDLAMLETIEHVVDEFMRDYIDPAEVIIARFNTDKSLNDDEADRLFLNLQSAITAIEEEVTRRYLKAQYSYYMLDDKYWNAWRKPTGGTQKDLEAVAKLETREDRQFYFVQYAAWRMINDKVQSLKATQRYIQQQLYRRI*
JGI26470J50227_100093215	F029972	GGA	MGKYQQRFSQRQERELEAEWPLAHRTVGSGNKWEKGDLSTEEQHNISFVVEAKATQAASYSITKKIWDTIKEHANNRSWLARPILAIRLYGPTIEKTSWGGERDNTPEELPVELDLICMDKNDFLELYYDYLRLKEKENE*
JGI26470J50227_10009325	F037031	AGAAG	MAITDPNQIGGIRPEDVKQTPEQIAQVNAFLAQQKREEEELGKEAPVELMESELMGVWKLLQELQYKYGNRKGSFENLSSLRAEAEEKFHSLGFQVVVDWVMPGLMQANGKDAPEPPTITIVGRTNGSEFNNEQNRYETGAGVADDYYNAKRKALGMGNKKLILPGQ*
JGI26470J50227_10009329	F052345	GGAGG	MDRRTREYKELVKMTPTTQELLSEEIDGELYLYKSSPNCKICTTSDDLKNIIDSLLLFPKTYKEVLRAIQPLQDKLGIEGSDRINYDNIRNHQKNHLPFEKRLVREIIEKRAADKNRSILDAGERLLTAEAFYEVIVAKGFEGIAQGYDKPTLTQTMYAMEMLSKLEKEAKDDYRPEELVNQLDMILTAIREVIPAEMKEILFDKIEELQLGTAVKKPKKLKGPKVIDAEYIDDDLIEDL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI26470J50227_1000932

Overview

Ecosystem & Geography

Associated Families

Sequences