Scaffold JGI26470J50227

Basic Information
Taxon OID	3300003375 Open in IMG/M
Scaffold ID	JGI26470J50227_1000226 Open in IMG/M
Source Dataset Name	Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003375 Open in IMG/M

Scaffold ID

JGI26470J50227_1000226 Open in IMG/M

Source Dataset Name

Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25649
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	30 (78.95%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

25649

Total Scaffold Genes

38 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

30 (78.95%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location
Location Name	Trout Bog Lake, Wisconsin, USA
Coordinates	Lat. (^o)	46.0409	Long. (^o)	-89.686	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Trout Bog Lake, Wisconsin, USA

Coordinates

Lat. (^o)

46.0409

Long. (^o)

-89.686

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008023	Metagenome / Metatranscriptome	340	Y
F012098	Metagenome / Metatranscriptome	283	Y
F016389	Metagenome / Metatranscriptome	247	Y
F030064	Metagenome	186	Y
F084140	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26470J50227_100022617	F030064	AGGAG	VTTFFTTLGIVAGALISLGLLFKPLITRLRRWVHWMESFMRDWEGEEATPGRDRVPGVMERLNKLDGELSNNGGSTTKDKVDRLYTNQAQVIETQNKLVEAFVEMGERLISIENCLTDSKTEPTK*
JGI26470J50227_100022621	F016389	GGA	MPLVRKFAIQGHAVPSVAHSPRGPFPPEVLAQPRMEVDPHHSDSLHVGLDDIRFFKCRACEEVLLEADLDNHDCEEINGY*
JGI26470J50227_100022624	F012098	N/A	MPKVHSIGAKHFFQVIDLPVVWGKKFVVRGWTQEIDEPFRTSEPYLLRLPKYKALAFGKWTGIKTEEEALKSALNTREVTYDDFTKEAGWTPAPDSDRETSSEDFYSGLDSVDGAQHVHNWQTYYRMAKESE*
JGI26470J50227_100022625	F084140	GGAG	MYTIGRLITEWQKSQNDVLLDEVLLGAEAFHAIAKELKKRY*
JGI26470J50227_100022633	F008023	AGGAG	VANTPTSPLDATGRAAETAAKKNAKAIQDRKEEISIAAQVEAENLENNVFDPKSPDTPIVLDEIVNVGVSTADNSVIIRTIVDVEDMTYGVGNLYTFKAGVKYKVSPDLAGYLEQLGYIWRPN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI26470J50227_1000226

Overview

Ecosystem & Geography

Associated Families

Sequences