Scaffold GBSed_10076392

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold GBSed_10076392

Scaffold GBSed_10076392

Overview

Basic Information
Taxon OID	3300003332 Open in IMG/M
Scaffold ID	GBSed_10076392 Open in IMG/M
Source Dataset Name	Marine hydrothermal vent sediment microbial communities from Guaymas Basin, Gulf of California - Sample 1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1054
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent Sediment → Marine Hydrothermal Vent Sediment Microbial Communities From Guaymas Basin, Gulf Of California

Source Dataset Sampling Location
Location Name	Guyams Basin, Gulf of California, Pacific Ocean
Coordinates	Lat. (^o)	27.01	Long. (^o)	-111.43	Alt. (m)		Depth (m)	2000
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014691	Metagenome	260	N
F019588	Metagenome	228	N
F040421	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
GBSed_100763921	F014691	AGGAGG	MKGIGFVSAILILMFVVVGVFTLSIAWSEIPVEPQANTSVAATSNIIPTLTSFLPYIALVVILAMAIGVFLSLVRVR*
GBSed_100763922	F040421	N/A	MREESVRAITMLTLAFIIGFKSIILFLQHSFGIALTLFLLAWTCICLAFPDILIGASIGQDLKLGEVIEKWVRRRELRRK*
GBSed_100763923	F019588	GAGG	MGEEKRIEEEVRGVLERLRVPYSVEIVIVDDESGKVVFRWRRGRGNLVRGMQKTIEVLDRKMGIPVKDLLK*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.