NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold soilH1_10275830

Scaffold soilH1_10275830


Overview

Basic Information
Taxon OID3300003321 Open in IMG/M
Scaffold IDsoilH1_10275830 Open in IMG/M
Source Dataset NameSugarcane bulk soil Sample H1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3967
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location
Location NameAyr, Queensland Australia
CoordinatesLat. (o)-19.733298Long. (o)147.17873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006289Metagenome / Metatranscriptome377Y
F042046Metagenome / Metatranscriptome159Y
F069418Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
soilH1_102758304F006289GAGVPLLQALRETLAQLRAHHRRRLPFLTPAVERRRPRLAAEDYAARHTIEHTLDRKANLRRLAPLDPDAAERYAQLLSYELTGLREVVHALESTVGGRELQECLAEAREEIARLEIEVAWCAALPGRGGGAAVH*
soilH1_102758305F042046GAGGMRNLFVLLAVIGLAGIVLGTLAVVHGAAGQAGPLPFTHEASGGPGSIIAGILLLATSLYLRRVWQGRD*
soilH1_102758307F069418GAGGMDQPIGRPADTREFMAMWNAVTAEHLTHKLTGVLQELAQRAPGAPAMDAAGAETLAPLLVRAFQIASSPDGGPHAAVQFLAEYAPGPGA*
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