NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold soilL2_10129955

Scaffold soilL2_10129955


Overview

Basic Information
Taxon OID3300003319 Open in IMG/M
Scaffold IDsoilL2_10129955 Open in IMG/M
Source Dataset NameSugarcane bulk soil Sample L2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5891
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → Mollicutes → Mycoplasmatales → unclassified Mycoplasmatales → endosymbiont GvMRE of Glomus versiforme(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location
Location NameAyr, Queensland Australia
CoordinatesLat. (o)-19.733298Long. (o)147.17873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044766Metagenome154Y
F085500Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
soilL2_101299551F085500N/AMEKEEKKPYSLSLKTNGYSFQKVEISQHYKEKASDITDELILELLRLFVDKKDFQPDKLTTDYFVLEKILHLGKKYKLI*
soilL2_101299558F044766GAGMGISQITQGTTKVPYKKSKKY*KQYNQKRLAYIIAKNRERRTLLKANKPPKPLSEFQQNKQNQLLKLLVNNRSFVPVPSKLKHPVIKNWNADNY*YSKKIDLNNLPRGCVRIYEDN*KNCYIG*LDIDCKK*TKIAKKYACGYVKSPKGHIRIPFLFRDKNQEKTGTLYYLGKKIGDAKISGEVMLPGNAYYDKSGKFLGYYE*KH*GTFFPKRNYIFKTPTEF*ELLKQDFKIEYKSISQHLVYQKKLTEIDYNTIQETFTSVREPP*QKMITTMGIPSQNRQ*
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