Scaffold JGI25908J49247

Basic Information
Taxon OID	3300003277 Open in IMG/M
Scaffold ID	JGI25908J49247_10000112 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003277 Open in IMG/M

Scaffold ID

JGI25908J49247_10000112 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21999
Total Scaffold Genes	55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (23.64%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

21999

Total Scaffold Genes

55 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (23.64%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F026880	Metagenome / Metatranscriptome	196	N
F030086	Metagenome	186	N
F033028	Metagenome	178	N
F057143	Metagenome	136	N
F060615	Metagenome	132	N
F076897	Metagenome / Metatranscriptome	117	N

Family

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_1000011214	F057143	N/A	MXEFWDIELEDELDLEVDDFIEGLYKLGXKRKNKEIFVKDIINHNGDKIDDGLFYHLNEQTLVYYPEPNSGITIKGIGDDISKIDEFIRKNIM*
JGI25908J49247_1000011222	F030086	N/A	MKNILKDPRLYFSLWIILSIILATMLGACKQKPLIEKGDVVEKFVIDSMVQLPPHSTIELDRKYXYFMSDSSEFTSLRKYNXGDTITYVYKKQGK*
JGI25908J49247_1000011235	F033028	N/A	MAKYTLNTYGWSFEAVCKSLTDEQIQIIKDKMEEEGFSELHEIRFDLDELLDLDFWDGEIFHKTEAFDNGTMHFELLDEEENKVLEFGIDETADLYETIEDFEEKYEYREYNAFPQKEGPTNVYLSIDENKGGMFKFSLESDTVPTPTDFTYSSGSIGTPEGDYDFIGQVFFKGQPLEIEDCLDNSGKSSSCMIYTLDGETIE*
JGI25908J49247_1000011253	F026880	N/A	MINIEDLKDFDTWKKWKNGMVELGEPEFETKPGFIEKRIQQMIHIGADDKYQQYSEGMCDDDITKWKQGFVVGANWLLKNKNEKNI*
JGI25908J49247_100001127	F060615	N/A	MYKIFLQEGKKEDSIKRVKEMFPDDSDFIDKIFDETAKLGAKXIXFVETETKRFLXDPFTDFDVFISGLIRQIEFFNKNSNKITPEVIGTVKELWDGVESRAFPKLDVVMKSPKDINSYNINTLGYLTQALSMISSKREKERAAKKEAEKVFEDGDVLGIRAITHNASCYYGSGTRWCTAGQQPDYFNKYTKDGKLYYFIDKSNRRQKIALYIKDGDPTVYDAADTGHDVDFLYHVYPEVENFVIEKLLGGGKVKSGFERIKDGTISSWNADRVDPLITSYNRDNEDNVTLNLDFNGRDSDYFDLFEWNEGDGDRMYLDISLSSYGTGEIFDSYYAEEEWKEGYLFSNFDDEQMKRLQTYMKIINPKLYECTLGLKERDSDDCRIKVSEFLSKAFENAVDNITSEYTYDMNADTEQGIREYLEKDYSNMFAEYGLPMTGTFYKKTVKLDDLIKTYQKYNPTFNIGIYGLLRRIINLENIDPPSIADSVYEFRTNNYEYSSTNSAIEKLLDTMEETINENENITGDYIDHYDFIKKLGGFDEWIDMPGDKRYMLKITDLDMEDDRVTFALQNRETRDLKKMRLPFEKFKDFIYNLQLF*
JGI25908J49247_100001129	F076897	N/A	MTKKIVRLTESDLERIVRRVIKESMGVGFMSGEPNGLKIKRMETKEQDATSVSTPDQTKPLLDKSMLVVNQKLPLDRKTLTSMASALKDFDKKLIGGTPYEALQGIWGNDLINSFNKSIATLGYQLGSAGGYKAMMDGRPFDNIMSMAALSAMVNDLLLLRDGLTYLAQVKAGMKVMPPDAVKKALPFFKEFSQKNQLGLA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25908J49247_10000112

Overview

Ecosystem & Geography

Associated Families

Sequences