Scaffold JGI26115J46592

Basic Information
Taxon OID	3300003268 Open in IMG/M
Scaffold ID	JGI26115J46592_1000033 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_07_M0_10
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003268 Open in IMG/M

Scaffold ID

JGI26115J46592_1000033 Open in IMG/M

Source Dataset Name

Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_07_M0_10

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	35195
Total Scaffold Genes	64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (23.44%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

35195

Total Scaffold Genes

64 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (23.44%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	Monterey Bay, California, USA
Coordinates	Lat. (^o)	36.25	Long. (^o)	-122.2099	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Monterey Bay, California, USA

Coordinates

Lat. (^o)

36.25

Long. (^o)

-122.2099

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008497	Metagenome / Metatranscriptome	332	Y
F029110	Metagenome / Metatranscriptome	189	N
F033812	Metagenome / Metatranscriptome	176	N
F039582	Metagenome	163	N
F048321	Metagenome	148	N
F087212	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26115J46592_100003314	F087212	AGG	MPLNQELAKYYPKLLKLAEKITKGNKVDALDLVQDLYVIILEYDQEKIKKIVENGHLVFWSARVLMNQYVRTNSAFKTKYYTKLRTENYDVKNFQYFDGIEELVEFENKLQFVKDKMNNLHEYDKLLFEIYFSSGKSIRKLAKDTGISTTSIYTTLKNVKQYLKDEVESEYKEFER*
JGI26115J46592_100003335	F008497	N/A	MRGNVYLSLDTKTFEGLIPEELMKTYGIPQYDEEGVQNGVIKPTFKELGEYNRRKFGANPMVKIGKAKFHIIELEASWVSGELSALLDLGKGKEYPNNCLMTRTEAAQFIRDNSDDSII*
JGI26115J46592_100003337	F048321	N/A	MEHWLQSVAINKLSLNIYNQCVDAEGNYFLIGVIDDQTRVATYGVISPVARSQRAIKFNVPTNAAPFNALKTNSFYNVVVYEQTNDTNTSPTDAVVLGLRWEGTMIIDADSEVTFTEYANPTARNYVYYNTED*
JGI26115J46592_100003345	F039582	N/A	MKVQVDTSDKTTVYTGGEYPVGHITQVVKQYVMKQELADNLLKNMKARIKELENEQGNGDLVYELKMQLHKVGAWYEPESVWADDYTGIPEVDMQLRHAPCEKLGSRSL*
JGI26115J46592_100003355	F033812	N/A	MEIGKQPTEQLLDFCFKTLNKALFEMSQNKAESDRKVLANILMNDLNDKFFRLTAADVTQAFHKGVREGEQLAINPRTWFNWLNKQKMKTNKLRIEQSQDGERLLIESNAQNIDKEEVLKEFLELCVIEPFEEHCKDEEFTFQGINQAFQWLELNNFIVLTTKDKEQMWEEVQEEIVARKKFVHNKRKQFHPVIMCREKALRMHFGKWKKAKKNLRKEIYKILDNG*
JGI26115J46592_100003356	F029110	N/A	MDKRISELLKQNAANVANSGTGSRKDIGGEKEVAKAWKEIQKDIKKIDKEFYEIIKER*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI26115J46592_1000033

Overview

Ecosystem & Geography

Associated Families

Sequences