NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25617J43924_10003517

Scaffold JGI25617J43924_10003517


Overview

Basic Information
Taxon OID3300002914 Open in IMG/M
Scaffold IDJGI25617J43924_10003517 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4534
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001511Metagenome / Metatranscriptome680Y
F002358Metagenome / Metatranscriptome567Y
F004830Metagenome / Metatranscriptome422Y

Sequences

Protein IDFamilyRBSSequence
JGI25617J43924_100035172F004830GGAGGMGNHAVTLKVTPSLRIECKFWLTDDGWNGSCEQPSITIQAGSFEHAKSEMELALGKYIESLLREPQRTSTGQAA*
JGI25617J43924_100035173F001511GGAGMFEDVDGMEVFVNPERVIWVREYARENTIISCGAEDKFTVRLTPAQAVAALGKSVR*
JGI25617J43924_100035175F002358AGGMPDVVSETRALETQASEQAQAFDKVSELVELLRNRSYAEIRQRMYDRAPGSPWWTACRAELELRNGQQVGEASLAMSRTSEKMRASVQHFEQLTDTLQQATKDIADLLRGTQEAGRRLEIAVYVTIGVTVVQFFNLIFEIFRKR*
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