Scaffold JGI25614J43888

Basic Information
Taxon OID	3300002906 Open in IMG/M
Scaffold ID	JGI25614J43888_10000870 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002906 Open in IMG/M

Scaffold ID

JGI25614J43888_10000870 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8639
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (69.23%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8639

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (69.23%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Laytonville, California, USA
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Laytonville, California, USA

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000688	Metagenome / Metatranscriptome	937	Y
F008511	Metagenome / Metatranscriptome	332	Y
F016091	Metagenome / Metatranscriptome	250	Y
F053492	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25614J43888_1000087011	F000688	N/A	MAEGGQRARAKLQTISITGGLLQLQHELSSGDFVEIAFHTRSGAIRGMAEMLNPTRKFQSACLQPFRFIALGDDDHRKLRMALDSALDRSFLDPVSEQLRTPSGF*
JGI25614J43888_100008706	F053492	AGG	MEDLSCLTKGVSRLPQAPSRSIVSIRIMSAESQHEAKKVGAVIYLATNRPLHLPDFLAEFHLSWPHLLLQKTGKEPHRALFRVGKSDFALELHHTPVPQEVTQPVVNSTLHWSTAGVMLARHQAHLSVAESAENSGVLSLACDLTKAIAALLPVMDSLAVCWLNGPALNSSESFVDTAREMFGTGLYPIKLWVAVRWDAQAGALHTKGMAQFGAPELCLSRQPDAAPIMVDYMFHVAQSVLTSHHSISDGVTMDSPQGKVTIEKSGAPGRRILILAPARTR*
JGI25614J43888_100008708	F016091	GAGG	MSVKWVVWIGLYLVMGVLVPWATALSWAHQHGSELRPRPRQLFQRGELGLIGLVVVISVIWNLLQSQFMQQTIAVATVLLALIGTMSGDVWIESYCRQSTGTVCNHERTWRDSKNLAFLVFSMAVVVEILLDRFSKVATL*
JGI25614J43888_100008709	F008511	AGGTGG	VSAAAPALAPAHRRTVTVRLADAAVTVAYLSLIFALLLVSFPVSFPRIIVTSWQSGYLVLVMMVLTLVLDAFLYLRVSYLLKAKPTVLVAACLGSLPIIVVGGLSFLLESAVAQTISLDLPNLQARVNEEILAHTYLGLVSAIFLPFLVIRLLQQFKATK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25614J43888_10000870

Overview

Ecosystem & Geography

Associated Families

Sequences