Scaffold contig

Basic Information
Taxon OID	3300002845 Open in IMG/M
Scaffold ID	contig_10006 Open in IMG/M
Source Dataset Name	Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Crim Dell
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002845 Open in IMG/M

Scaffold ID

contig_10006 Open in IMG/M

Source Dataset Name

Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Crim Dell

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9278
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (76.47%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

9278

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (76.47%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Stormwater Retention Pond → Stormwater Retention Pond Microbial Communities From Williamsburg, Va

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Pond → Unclassified → Stormwater Retention Pond → Stormwater Retention Pond Microbial Communities From Williamsburg, Va

Source Dataset Sampling Location
Location Name	Williamsburg, VA
Coordinates	Lat. (^o)	37.270661	Long. (^o)	-76.7142	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Williamsburg, VA

Coordinates

Lat. (^o)

37.270661

Long. (^o)

-76.7142

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000468	Metagenome	1102	Y
F002044	Metagenome / Metatranscriptome	599	Y
F002357	Metagenome / Metatranscriptome	567	Y

Sequences

Protein ID	Family	RBS	Sequence
contig_1000612	F000468	N/A	MTVFTPSWKLTVNGVDYTDVTIANLSHNAGRKDIYSQPTASYMQCSILALNGETYNFDVNDGISLQIKDSTNTYVSLFGGNITDLIVEVGNTGAAGQEIRYTIIALGALSRLTKEIYNDTLSQDFDGNQIFTLLSSALTNSWNEVSASQTWAAYDPTTTWATAENVGLGEIDQPGLYEMENRASNPDTIYNIASQIANSAFGYLYEDNEGNIGYADADHRQTYLAANGYVDLTANHALGKGLKTATKSGDIRNDIYINYGNNFGSQKTASNATSIATYGYKAETINSFIHDATNAQEVADRYIAQRAFPQAVFDTITFPLTNSEIDDVDRDALLGIFMGQPIYIANLPTQISGGQFEGYVEGWSWSSSYNQLLLTINLSPVAFSQVAMRWNSVPITEAWNTLDNTLTWEYATIVA*
contig_100062	F002357	AGGAG	MAFNLEDYEDVATLNKWFIGNFPLGRSDISVISHDAEKGYILVQATLWRDATDVSPAVSNIAFGSRETYIPNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMKKVDTNASFKEKLESRQNMYGKPGTKSAQIETILRDSFAADKKPEPVAWSVGDVVAEIGASTPNEPPACQHGHILKEGISKGGKPYYGYVCKAKQCEAKWAKLTANGKWYFEGGE*
contig_100066	F002044	AGTAG	MANTRKPNKRKKINRRVVRQTPEPLSKLDQHYTALHECYKAARKAGFTPEHAFWLMTEHKTFPDWIVGDGGIIPSIDPTDDEDED*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold contig_10006

Overview

Ecosystem & Geography

Associated Families

Sequences