NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J40625_100361901

Scaffold B570J40625_100361901


Overview

Basic Information
Taxon OID3300002835 Open in IMG/M
Scaffold IDB570J40625_100361901 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1431
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002386Metagenome / Metatranscriptome565Y
F010315Metagenome305Y
F015706Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
B570J40625_1003619012F010315AGGMNHLFEEFQGADIERLADCLIAIRKAGLKVDKHTQAGVNQSSGNVWVWSEDWAGCVACSIGFDVFWVYSCPECGHEYEYENYSDLENYAETCASPTMEGKCDNCAEVTV*
B570J40625_1003619013F015706GGAGMENYNPIIAYHAKKDNTGWREVCQHPADWEGWHPFDKGMIQEMLTQGHDVVTIGWNMYQVVR*
B570J40625_1003619015F002386AGGMKFAFIPKAQYKIGQIISVHGQPMRVESYTHTGKNVVVHTLENAPKFQRIVCVCTDAPSIVGVTA*
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