NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J40625_100077948

Scaffold B570J40625_100077948


Overview

Basic Information
Taxon OID3300002835 Open in IMG/M
Scaffold IDB570J40625_100077948 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4318
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (42.86%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019061Metagenome / Metatranscriptome232Y
F032252Metagenome / Metatranscriptome180Y
F036765Metagenome / Metatranscriptome169Y
F047662Metagenome / Metatranscriptome149Y
F048267Metagenome / Metatranscriptome148Y
F071163Metagenome / Metatranscriptome122N
F085383Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
B570J40625_10007794812F085383N/AMTDQEKLYKLCILELLIAIDEDVVDWRNYPKLWEAVKLADRTLDIWAGDNLKQMKAELEEV*
B570J40625_10007794814F047662N/AYETDIIIHQYSSDGDFYYKLKVTDVMNMDYYYDGSASTLDDVMECIQLHLKQHQN*
B570J40625_1000779482F048267N/AMTDEEWETSLKSMNEGVKKWVDEEIDKIKYNVVKEIINRELKND*
B570J40625_1000779483F032252GAGGMKLYRYNKDGHLYTLYEQLRPFYNLVAVPYFPNQGILAKSKRNISMNDFIVVAER*
B570J40625_1000779484F019061N/AMKKMTEPTDTEILEFLLNQFHPHNLQMNGESDWVFMNGGSRMNHLKGKTVRNAVITAMRAK*
B570J40625_1000779486F071163N/AMTKTQLALERVIIELDSWCDNWTPTSYNDPRISLRQIADRARNVLEEEKNDLRSSNLG*
B570J40625_1000779489F036765GAGGMTIKATELLKLFSKANQLDLSVEVCEDKDGDYVIRIYEMFRSEGFDEKVVITQNGESNWNKGSYGFDAMMDWFDVMLEEKRQEKIKEQKRQELLARLTDFEKDLLGVK*
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