NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J40625_100020379

Scaffold B570J40625_100020379


Overview

Basic Information
Taxon OID3300002835 Open in IMG/M
Scaffold IDB570J40625_100020379 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11214
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (82.35%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F001507Metagenome / Metatranscriptome681Y
F002515Metagenome / Metatranscriptome552Y
F019324Metagenome / Metatranscriptome230Y
F063623Metagenome / Metatranscriptome129Y
F074868Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
B570J40625_1000203791F074868AGGAGMTQVINIGLALGISGALENRIIHDFNNGGCKSTYGLSVSQRKALIKILFSANAPKCACVNCL*
B570J40625_10002037914F002515N/AMKQRKTKDELRILMELRRSNAASPIPSKKKYNRKKCQSLMLELKKERE*
B570J40625_10002037922F001507N/AMTTTYKPHTIEELITEIYEDNYSHFEFMTEMNGGDCDCSLHITMNTIVRYWGE*
B570J40625_10002037923F019324GGGGGMLGYELSDQEDMVTAIQSALTTVNPDDDPWLYNNLRMAEQFLQGLWAEGYFD*
B570J40625_10002037927F063623GGAMDKLQPRLQKAVDVGISGLDIIHGELKHMMLEAEEGLNIAQAEEDESGEAMDSMERKYWEGQLDALSIVYELTYKLSFAIGDKNG*
B570J40625_1000203794F000447AGGAMGYVEIFRLDEQGAGWVDLSEATPDELLNIEIALFQEGAL*
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