| Basic Information | |
|---|---|
| Taxon OID | 3300002835 Open in IMG/M |
| Scaffold ID | B570J40625_100020279 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11250 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (73.68%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.099444 | Long. (o) | -89.404444 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006300 | Metagenome | 376 | Y |
| F011293 | Metagenome | 292 | Y |
| F014256 | Metagenome | 264 | Y |
| F020893 | Metagenome | 221 | Y |
| F049592 | Metagenome | 146 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| B570J40625_10002027910 | F011293 | GAGG | VTTRPDPGDAAYVAWQLTKDGERMKQYGHPWNDYTMVRRLFSTLTNYKHNLTVQEAALFMVCVKLARLMKSLDVEKMHEDSLIDAIGYLNCLHMIDAKDQLKDAPKHIIGDMVVEWER* |
| B570J40625_10002027913 | F049592 | GGAG | MARLEHPLVLVTWHDAHTIDNDEWHELADLTDEPCVVQSVGWLLSKRNARHLILAQSLTDDKGVDNVLFIPARMVRKVVRLQIPHKRRKVR* |
| B570J40625_10002027916 | F020893 | N/A | MQTEITVAIISAVALIVAGVPAALVERARRENADDHAYVRKILTRVENKLDNHLEDHINGFTRRNNSEAEQNR* |
| B570J40625_10002027918 | F006300 | GAGG | VKWQYVLEDWVKGFVAGSVAVLITSGYDIESALKAGLAAVLPLIYAWANTKDARYGRK* |
| B570J40625_1000202792 | F014256 | AGGTGG | MSNLFKEGYDQLVTRLGLITGLKVFNDPRNINVPCAIVEAPSIQMASNVVADMEFRVVIVGMGTGDNRTLDQLLDLADLIRAAQIGLNTARPTTVSYGGADYPAYELVIRTKVAP* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |