Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100015069 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100015069 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13566
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (81.25%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

13566

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

26 (81.25%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F001460	Metagenome / Metatranscriptome	690	Y
F001781	Metagenome / Metatranscriptome	635	Y
F005745	Metagenome / Metatranscriptome	391	Y
F007363	Metagenome / Metatranscriptome	352	Y
F017484	Metagenome / Metatranscriptome	240	Y
F023344	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001506911	F000808	GGA	MEYNYSLTVSYDGKLFGAYRYTDMLEAVDAWNKCVDFGDAKEYATYNLSDPMGKMYTKNFYRNGEVNGK*
B570J40625_10001506919	F023344	AGGA	MAVEMFTDSLGEHIMGAIQVDIEEHLFEQWNNTNLDEGVEYAEWQFLQFAPDSVKQSYNEYYGYTEKDEYYLC*
B570J40625_10001506920	F001460	GAG	MLGYQQEDLDRMINAVHDAKLFYLRHPSDLMDKTQLRSDLEDTVSFLQGLWAEGYFD*
B570J40625_10001506922	F005745	AGG	MIELETLEPHLQRMVDHGVNGLDIMHGELKNLMLVAEAQLEEAKRIEEENDYSDAMESMERKYWEGVSDAYTSLYKLTYDLSFAIGARNEA*
B570J40625_10001506923	F001781	GGAG	MKPDDKDKLNQCLDILDTTDLGLSLVWLWTWSTIKNFMEDDESFKMKCSEQEMWDNLCEAVSVGHGFSLEYGAEQHHEDVMEWMLNRDYMVDTMFEEDED*
B570J40625_1000150693	F017484	N/A	MANLEIFEMNENGAGWVSLENASASTKLDLEIALLTKAEVKMLCFKCHIEIPRGNVCVNHKNVRGAVYFSE*
B570J40625_1000150699	F007363	AGGA	MRAYSIVDLLVDTYYAPQSLSRRFNGGIINHAEKREDVYPPEGYEAFAIRYRPTGRLNDQWATVAVRITDY*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100015069

Overview

Ecosystem & Geography

Associated Families

Sequences