NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J40625_100005092

Scaffold B570J40625_100005092


Overview

Basic Information
Taxon OID3300002835 Open in IMG/M
Scaffold IDB570J40625_100005092 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24489
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000346Metagenome / Metatranscriptome1253Y
F001530Metagenome / Metatranscriptome676Y
F001827Metagenome / Metatranscriptome629Y
F009260Metagenome / Metatranscriptome320Y

Sequences

Protein IDFamilyRBSSequence
B570J40625_10000509213F009260GGAGGMATYKVPKKVANVIVGEEPAKETMRKANVAVANTRSQDYPPMKTSGIVVRGGKAQTKGKMARGPMA*
B570J40625_10000509214F000346AGGAGMDKKDLAQDKKMIAGAVHKHEKKMHPGKPMTKLKAGGKTNGDMLKYGRNMAKVMNQRSPGRGG*
B570J40625_10000509221F001827GGAMNHDVKTMADGAAVVMGLGGFLGWMTPVVTLIGGVLTIVWMVIRIWETDTVQRWAYKDAVNK*
B570J40625_10000509224F001530N/AMQITKEFLEIEIRDLETEAQKAQTFLIQSQATIQAYKMLINRLDAPEPEQ*
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