Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100005034 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100005034 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24659
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (13.89%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

24659

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (13.89%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F000847	Metagenome / Metatranscriptome	861	N
F001129	Metagenome / Metatranscriptome	768	Y
F003267	Metagenome / Metatranscriptome	496	N
F006105	Metagenome / Metatranscriptome	381	Y
F024098	Metagenome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000503417	F001129	N/A	MLGQGGSMRFVDAAVSGQNFDFIVVNTAATFTTLTGSGGEDLLTAYAMSGKSVSAGIVISGRNGGKITAVTPSVGSVIGYTFL*
B570J40625_10000503418	F000847	AGG	MSWIKIKQALLALANAHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSASTDLGSLALTVGVYFSDRVESIATMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISSLTNDPTQEWTLSTSVSLTRFVESRDDRTAGWVATMSFQLPYSHSICEIPT*
B570J40625_10000503422	F006105	AGG	MIYLSPNTTNTIVVTWTQRASSGDRYILRLTNIAKNLTTDFTILKTANLSSYTERYDKFQITLGAVETGSYRYEVYDTSSTVAAAVAVVETGLAYVQVISLTFNTFANTIQYNVYGASAVSVFDSTFDQTFQ*
B570J40625_10000503430	F024098	N/A	MSISVLSGSPQSATPVYNKMIFKVSGSLTSATNYRYVCDVKNGAGTTTLARLKCDKLPTTNFGFFDVSRVVETLMAPTVPTLAQVGFADHAGFYSGYRLTFMEEYGSTPVVQTGTTTNVSGVLAFAGNLEQLELADWSGETYFPSSALQGGEKALTTTCVQISNPANALNVVYSNSYGFLCGGAGFSGAIVSANVVYTNAAGAVVRNFSVPRPLSVSGSIHRFGAGPMNLKALTSAQCSDGQAGSFNFPTAEGAGYYIQFIDLTDAGYTATWFRLGPCERFNSIPIHFINKYGGIDSYTFTMKNRKRANVEREVYGYNSDVYATTTYNKMWAGSFDYVYALNSDWLTDAESEWLIEMVRSGQVWLELDGQLVEAVVNANQYQFVTRRNDRLTQLQLEVAVAYDNSIL*
B570J40625_10000503433	F000557	N/A	MKLQDLTIDQFQRIAALEFTPVLTDYDKRAGVVAIVEGVDVSLVREMPAKGLTKRYKTIIAEWNELPTLAYRRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGFLGYFPKKYDGASHQDRAELLKANAKIGDVWGVVSFFLLSSESYLKVLSDYSKHLTKGMQGQ*
B570J40625_10000503436	F003267	N/A	MKLVHYYHIYCGGGGQWQLIMHQHMMALCNYGLIEQLDEIRVGIVGPPDQRKVVKEILDNSLVAAKIKVVVTRTNAWEQATLTEMYKASQTEDAAYLYAHTKGSSDPSLINQLWCRSMVFFNIVAWERAIAELANVDCVGAYWLTKEEFPQIADHNNPDGYPYFAGTFWWAKSSHIRELGEPVREHRWQAEHWIGKREGMTVYNSCKGWPGPDKFVITF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100005034

Overview

Ecosystem & Geography

Associated Families

Sequences