| Basic Information | |
|---|---|
| Taxon OID | 3300002835 Open in IMG/M |
| Scaffold ID | B570J40625_100004647 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 25614 |
| Total Scaffold Genes | 46 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (10.87%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.099444 | Long. (o) | -89.404444 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010163 | Metagenome / Metatranscriptome | 307 | Y |
| F019658 | Metagenome / Metatranscriptome | 228 | Y |
| F046638 | Metagenome / Metatranscriptome | 151 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| B570J40625_10000464710 | F010163 | N/A | MLLLKIAKNSFFSQNAITHSYIKHTSHTIKALDFIKEETFSYYVQ*LLLF*FTNLSNLRIKTNYFISYMYFSFVNNQKLLSYVININLSLTNTLINVNDVNGNPKFFYSAGMFNLQKKQKTRQPKAIITILRALLLKSKFFKTKPVAVHFNNLFFKHQSYIFKKLKRKIFAKLVISYLYKAHNGCRLKKKKRIKIRTRTRKL* |
| B570J40625_10000464713 | F046638 | N/A | MINTLKSSVLKNVVVLIHGPIILLNNDNNNTKLTFKELENINPLINLLGFRLNNKIYSKKQIKNLRKMSYLENIYTFHKCMKTFTKLPY*KLKTTKTLSVSK* |
| B570J40625_10000464730 | F019658 | N/A | MKTNRIKNRNYKLFKYNLLKLQVYSNQPHFKVANFSNNILEQIETYLKQVLKIIFEYHVCHFKILFIGFPVVSKMRQMKLVHFTNHNFISEKS*ISGVLRNRFSILTYLQLIESQNLSKSLKLLLTLKTKPHLVVMFNQKVETNTINEFYKAGIPILSFN*NSLNSLKIAYHTLGNFDFVERNIKLTFFFLFYSLLKKTPVKKRKKLRQHQF* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |