NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J40625_100004313

Scaffold B570J40625_100004313


Overview

Basic Information
Taxon OID3300002835 Open in IMG/M
Scaffold IDB570J40625_100004313 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26528
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (54.55%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004111Metagenome / Metatranscriptome452Y
F006218Metagenome / Metatranscriptome378Y
F011150Metagenome / Metatranscriptome294Y
F013409Metagenome / Metatranscriptome271N
F013885Metagenome / Metatranscriptome267Y

Sequences

Protein IDFamilyRBSSequence
B570J40625_10000431317F013885GGAGMLDYKSIKEYFTKFYADAFEDAKKFWKDYAKAVEEFYNKNK*
B570J40625_10000431329F006218N/AMGKRKKILKSCGNCHICGKEHLSNEGGWVINAEKLNFCHSLDHSCYEIYFNNVRAAEKQKVVINDNNDKRMNLYIEYLKKQKCKHKYATEKV*
B570J40625_10000431336F004111N/AMKEKIKQVNELCAANGAYINQHGKKTVSAWSKVKYFREVFGTEFGINTMIVEHSDRYVIVKCLIMGYDPERIIATGYSKQFRDKPGYLEIAETFATTRALSFMGICLEDLTSKEEYEDLGIPVQPMNGKDTTSAAIRYDDGIILELTKKINYAPHTAKLDFLWRANKDLLNQIKIKDLATYNSILQRFNSKRDEITTQNEV*
B570J40625_10000431337F013409N/AMMNGTIYNLGYEIDSYSPRICDKLFDKITYIGKASGKNKYGTFYKSKEVFAHSCSIEKTTKGKNERKNKTS*
B570J40625_10000431338F011150N/AMCRNMDINWYHKQHHKIREQFRHDIIMSKIKQREDKLFRNMFIKISLIITAIVLLVTVVF
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