NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J40625_100001482

Scaffold B570J40625_100001482


Overview

Basic Information
Taxon OID3300002835 Open in IMG/M
Scaffold IDB570J40625_100001482 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43091
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (60.32%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024538Metagenome205Y
F081270Metagenome / Metatranscriptome114Y
F089826Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
B570J40625_10000148255F089826GGAGGMMSKEKDKAILDYVIRWLDDNIDDAPLEGVSEDSANLKEKIEQAQDPRITVADIESGIF*
B570J40625_10000148256F081270GGAMKKKKDLVWGWVDDNHISILWNIDDVKRQAEISGLKLTKAECREVLDACLDGHDANIGISWDILDYHICNLFGDRIGKAA*
B570J40625_1000014829F024538GGAGMIFKQYEDGSCDIVFSKKERLRLFLKGKLHLSDENLRHFGNNLVKIVADWQLKFKEEIANKPTFTDTKIKSD*
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