| Basic Information | |
|---|---|
| Taxon OID | 3300002835 Open in IMG/M |
| Scaffold ID | B570J40625_100000380 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 72625 |
| Total Scaffold Genes | 84 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 71 (84.52%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 10 (100.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.099444 | Long. (o) | -89.404444 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001106 | Metagenome / Metatranscriptome | 776 | Y |
| F001562 | Metagenome / Metatranscriptome | 670 | Y |
| F002489 | Metagenome / Metatranscriptome | 554 | Y |
| F003408 | Metagenome / Metatranscriptome | 488 | Y |
| F009961 | Metagenome / Metatranscriptome | 310 | Y |
| F012456 | Metagenome / Metatranscriptome | 280 | Y |
| F029434 | Metagenome / Metatranscriptome | 188 | Y |
| F050376 | Metagenome / Metatranscriptome | 145 | Y |
| F051930 | Metagenome / Metatranscriptome | 143 | Y |
| F099281 | Metagenome / Metatranscriptome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| B570J40625_1000003801 | F001562 | GAGG | MKSQFEIDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPIAFSIGLIEHEDYLAEMENE* |
| B570J40625_10000038019 | F002489 | GAGG | MQEDQNNENTSNLEDNLPMVSYIMLHRIYDILTLISNKLAGSEDTAKMVEYHQAGYLLGPSPSYNPGETNE* |
| B570J40625_1000003802 | F029434 | AGG | MKKYTFGVWLDIDAEDEEMALSLFDSVVKNAFVSDSYCFEWKEVADEIAV* |
| B570J40625_10000038020 | F051930 | AGGAG | MRIQYVSTYISMSGEGLVEKLLCPVDQSILFSNQDLEDRIYLYCLECKYKKNIGTSTYENIVRAVDSVNKK* |
| B570J40625_10000038032 | F099281 | GGA | MATVDKNFKVKNGLNVAGAATFGAAVNVENLVLNSTPLAFDSSTGRLKIQIGGVWKEIALLVDAQEDPTALTFMDIGLAIDYDGSPVYSVFANGVNTVATKFADGGSYTTDTFSYTFDSGTIA* |
| B570J40625_1000003804 | F050376 | AGG | MTLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAD* |
| B570J40625_10000038050 | F001106 | AGGAG | MSFDTLTVAELKEIATEFAVDTEGLKNKKEVIAAMAEEGVTYSVYQKTVKAIEEATEEIEILPVFDPKAQPEDTILVRMTRDNHRYDIHGYSFTKTHPFVAMSEDDAQKIFDTEEGFRLATPKEVQDFYN* |
| B570J40625_10000038053 | F012456 | GGAG | LDSSVALLQTASGLERPMAGNKPGIIKDSSVAQISAFLYYQASVLGKLTANKAFQSLFKQTIFNQINKDFGDYIDSSARVKPTALHHVYEWNKTGQETSRLFKLNRMDADGLSFRVTYDFKLSKSSVPSKNKKQRKKYVFATKASVMEAGMPVIIRPRSAERLVFELDGITVFMPKGSSVTVKSPGGRASSNQFRLHYGRYFGGQLVNNSIKASGFQNIFNAKMSKALDTPASIRKVQYSFTAGKIRLEADMELQTAFGGAL* |
| B570J40625_10000038054 | F009961 | GGGGG | MTVDYKIDAVFELRKFLWNELKTTKIFDPTEYYSDNINMEIIPIIPVQQQPELNQFLSGKKHIVYDKIGLSYEDIWLLCCEKVLFTVYSTDVSDIYEIRNLMTDLFRRMDDSARDINKFKDEPKIKFHSIQVVETSPITPSEELQGFLSSDIILEVKYSRITGPDGRFI* |
| B570J40625_10000038057 | F003408 | AGAAG | MPELVQTFKSMQKTESEKRKFLASIQGVDLNESSNENKEGSSFEDVKRRALGITASANDVVSLQGSFASEAGFGIGAGLGYSIE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |