NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J40625_100000121

Scaffold B570J40625_100000121


Overview

Basic Information
Taxon OID3300002835 Open in IMG/M
Scaffold IDB570J40625_100000121 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)110022
Total Scaffold Genes171 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)129 (75.44%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000264Metagenome / Metatranscriptome1424Y
F013526Metagenome / Metatranscriptome270Y
F016958Metagenome / Metatranscriptome243Y
F021109Metagenome220Y
F048943Metagenome / Metatranscriptome147Y
F052590Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
B570J40625_100000121102F000264AGTAGLTKNNMSGKLYTNELWLKKRYHVDKKSPEDIAKECGVSLETIYVYLAKFGLRKSKR*
B570J40625_10000012111F048943GGAMYQITERMKSMSNYLLEYMKIHLISLEQDLENIAQEMELLDPESKACKELDYEYNHMSGQILSTRHFIQVGEEHAGN*
B570J40625_100000121132F052590AGGAGMIVTNLEKMEKIVAKNKELSWLGWDVRDLKRSESGRTAVNGVRVDGVWYLQRIYSVTRNGWDIPNKYRG*
B570J40625_10000012131F013526AGGAGMKKNVLISFVTDAETDLQAIFALNRIMEKLPESDLEKFEAFEVLDAVQ*
B570J40625_10000012133F021109AGGMDTLNRIRQEQQARYAIEHEKAMAKSPWIRESVKAFRNATPEQLAQIEAIVAKRAGK*
B570J40625_10000012134F016958AGAAGMKLKITSMNGKEFNMDLPTKENVYYFMEMYKKSLKKNQRVKITCDLLGIDGYLQGTAPLR
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