NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24930J39211_1011392

Scaffold JGI24930J39211_1011392


Overview

Basic Information
Taxon OID3300002751 Open in IMG/M
Scaffold IDJGI24930J39211_1011392 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C33A6_35
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)549
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameMonterey Bay, California, USA
CoordinatesLat. (o)36.25Long. (o)-122.2099Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026278Metagenome / Metatranscriptome198Y
F044787Metagenome / Metatranscriptome154N

Sequences

Protein IDFamilyRBSSequence
JGI24930J39211_10113921F026278N/ASQRINVRLVFFDIKNMGTSIAVFRKGVALTQIAAIGELIEDGKVIKVSKQAGTSKQISQSTLIIAADGRFNQQTASIALKRVCEKIIKDLLE*
JGI24930J39211_10113922F044787N/AMKKILLLLVSVMFTLSSYGQSSIDYSPVNTVTQVGDTLIMKFQYFKVDGNDLTLGQLDFEYNNKLLSYISHESQAPTGASFARNNWTGYKY

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