Scaffold JGI25385J37094

Basic Information
Taxon OID	3300002558 Open in IMG/M
Scaffold ID	JGI25385J37094_10006903 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002558 Open in IMG/M

Scaffold ID

JGI25385J37094_10006903 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4010
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

4010

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.718176

Long. (^o)

-123.652732

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F025951	Metagenome	199	N
F078451	Metagenome	116	N
F104899	Metagenome	100	N

Family

Sequences

Protein ID	Family	RBS	Sequence
JGI25385J37094_100069032	F025951	AGGAGG	VRCLWKGLLGGVLLVSALVALSLPALAAVQRFTDEAGELLYTIDDDGMVSMFENAPGTDVTLSVTRGTREQMQPQVTEVIPEAVPVGSFTVLKLRGKNLVGATVKLSVPSIEVKAYKGKPKELDVPLQVPLDLPPGEVXIEVTTPIGRTTARFKTTEVQLGGSGPRPDVITHPGMGYGADEGARSIPTTAPVSCPAGMAGVASDGGGFCIEVDRTINGVFRKVEMACAAVDRRLCRLSELRTACEQTVTGKLPLKNMLGAWEWTSTFEIEVDYSTYTEGAGNTKYYLLGKADCQTKHTAFETDARAYAGRCCK*
JGI25385J37094_100069033	F104899	AGTAGG	MLLLGPWMEPALAAVITNEPTGFNGYNWGARISEYSSLKLVSDPAIAHPLPDVAVYENPGEVFTLNGVTFGKIQYRFYKDQLGGIQLTFEGRENREKLRQWIEERYGKVPLPERRQKNIEWHGKSTVINLGYDIITKQGRLWFIYLLLTPFDNSTTDTSGY*
JGI25385J37094_100069034	F078451	GGAG	MMRRRRRVCAAVLVAIGLMGSGLHTAAAGETIRDEAGRVIYTIDDGGIVSMFENSPTDLTISVTRGTREEMKPQVSEVVPESVPAGASTVLKLKGKNLVGASVKLSEPGIEVSPYVGKPKSLDLPIRVPANVAPGDVFLEVTTHIGSVKAHFRVTDFQIGGGFVKRDSAAKQAIPMTAPTSCPEGMVGVAAERGGFCIEIDQTFSGDIRKAEKTCAAGSKRLCTASEWRTACEAATAGKLQLKNMIGDWEWTGTLAIKEVTGQATDYGATGDLNAVLMGLSDCKTNRDYQTWRTETIAGRCCK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25385J37094_10006903

Overview

Ecosystem & Geography

Associated Families

Sequences