NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold TOLCLC_10402244

Scaffold TOLCLC_10402244


Overview

Basic Information
Taxon OID3300002498 Open in IMG/M
Scaffold IDTOLCLC_10402244 Open in IMG/M
Source Dataset NameHydrocarbon resource environments microbial communities from Canada and USA - Toluene degrading community from Alberta, Canada
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMcGill University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)512
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location NameNorthern Alberta, Canada
CoordinatesLat. (o)54.0Long. (o)-114.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069434Metagenome / Metatranscriptome124Y
F070634Metagenome123N

Sequences

Protein IDFamilyRBSSequence
TOLCLC_104022441F070634AGGVTNDILKESSVRKGRHIITVLEFQSGEVMMYVDDSKTGIKEDIALREYINAYEIYY
TOLCLC_104022442F069434AGGAGGVKHIFDKTTCWNIFDHSDTPEPLWELQRQGKYNETRRAAIRLTLKHPLRMLPVIYNCLRCGRF*

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