NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25127J35165_1040779

Scaffold JGI25127J35165_1040779


Overview

Basic Information
Taxon OID3300002482 Open in IMG/M
Scaffold IDJGI25127J35165_1040779 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1033
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004523Metagenome434Y
F005491Metagenome / Metatranscriptome399Y
F014834Metagenome / Metatranscriptome259Y

Sequences

Protein IDFamilyRBSSequence
JGI25127J35165_10407791F005491N/AMSTFYKDTRYSGKLVRLEDVIDEIYDRALETIDESLYELLNNKDDDEFYEDYKEAFPLI
JGI25127J35165_10407792F004523GGAMSTEIRSAREAMTIFKILGIKEVTTMRQRKNGTQVFELPIRQMWQTLNPEPIRFACYKSGYVRNVSPSNSSAYQINQTKIVPSGYKDWTRTERKLIPSWEERLIYLAKFIIKNYYQKPTYLISDYAIKCLKEAYYEQNKTGLPFNEVPWNTVSPADDVQVIINGHRYNLS*
JGI25127J35165_10407793F014834N/AMKDTNEIEKQLKRKADKYIEQKANEMYAIHQEIAEFTGTSTNFIDYITHFNNYDSAAPENKGNHTAYCDAHQTKKKYRLELEMNYKKRLVAKYTKELLTKLDIFE*
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