| Basic Information | |
|---|---|
| Taxon OID | 3300002296 Open in IMG/M |
| Scaffold ID | B570J29587_1000679 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 02JUN2012 deep hole epilimnion |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3474 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (91.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001477 | Metagenome / Metatranscriptome | 687 | Y |
| F015702 | Metagenome | 252 | Y |
| F031792 | Metagenome | 181 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| B570J29587_10006795 | F031792 | GGAGG | MSYEPELNDPIFYAEEYEPPIKCFKCGDTLDRDDIVWADVEGLWQVKGKEGNDTAWCVVCLPSEGEGNE* |
| B570J29587_10006798 | F015702 | GGAG | MTIKEVELEYTVYNLVRLSEKVWGENATEYLAGRLESVITYKQMKVLIDSLKEEASE* |
| B570J29587_10006799 | F001477 | AGGAGG | VSNIYTIHPKKSDLILFYEVLTPEGENEWGGANAEQCIQWLSLAPSGSRVLVSAWDSDEEDAHLVGQTLDITEIVRAASL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |