NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24820J26691_1003565

Scaffold JGI24820J26691_1003565


Overview

Basic Information
Taxon OID3300002176 Open in IMG/M
Scaffold IDJGI24820J26691_1003565 Open in IMG/M
Source Dataset NameMarine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_5_50m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4514
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)0.0Long. (o)-158.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016674Metagenome245Y
F020255Metagenome / Metatranscriptome225Y
F042935Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
JGI24820J26691_10035653F042935GGAGMFNYDTIIKQLEAMSPIHQDEFAQKXIEKNSGLAAAISTKINIAHQDKYYTDTEAMNESLKLRGHA*
JGI24820J26691_10035655F020255GGAGGMPSPSEIQSMLPLFLQLLFFAVAGALIVGVFFSIVGWFFRNAILIMVVLFILFAVNYGYVDLTNLFGAIK*
JGI24820J26691_10035658F016674AGGAGMPKKKSNIIDFKKASLKKFNDENEIVFTVEDKDYELGELVHQAHNDNGIEFIFKLEEFDDDEEPTIH*
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