| Basic Information | |
|---|---|
| Taxon OID | 3300002128 Open in IMG/M |
| Scaffold ID | JGI24036J26619_10000030 Open in IMG/M |
| Source Dataset Name | Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 25308 |
| Total Scaffold Genes | 40 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (82.50%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Kellogg Biological Station, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011852 | Metagenome / Metatranscriptome | 286 | Y |
| F080214 | Metagenome | 115 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI24036J26619_1000003027 | F011852 | GGA | MHVSGVCVQMRMPLFSYFVVMGSTLTLGLIYISNRIEPLGSPVPTSQIVGIAKPFKPEPERSPYIITGSNFAAAYRPASARAAAEPKPTRRXASLQQQQPATDTEXRRVPRWKQIAQNPIAALMSIH* |
| JGI24036J26619_1000003034 | F080214 | AGGA | MNAVNAGSRDPVATFGMARNESRKSFLLRFMEALKESRRSEARRVIAINAHLLADHXTLDVDDRX* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |