NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24028J26656_1000447

Scaffold JGI24028J26656_1000447


Overview

Basic Information
Taxon OID3300002091 Open in IMG/M
Scaffold IDJGI24028J26656_1000447 Open in IMG/M
Source Dataset NameLentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13273
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (89.47%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location
Location NameBrandenburg, Germany
CoordinatesLat. (o)53.1666Long. (o)13.0333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001715Metagenome / Metatranscriptome647Y
F019309Metagenome / Metatranscriptome230Y

Sequences

Protein IDFamilyRBSSequence
JGI24028J26656_100044713F001715N/AMTDTLVPNIEENIPLPENAKEAFPDLSAEQELQMRANVIKLMSDLTGQEISPTKENAEQAKALAKEMISNPAFRPDYSKYPNETLAMLAGMVAQMNVSIVEELSDLKMYVVNKLVAEIEAAKDPKIRVAALGKLGEVDGVDAFKKRSEVTHKILTAEEVEKELLETLNSLENKVIDVEAREIVKNDSKSDA*
JGI24028J26656_10004479F019309AGGMMSYEVLQTSQHFIKQIDENIKRLEEDLGASSAKSYEEYRYMCGVITGLLTARRFITDLTKSMEDSDE*
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