| Basic Information | |
|---|---|
| Taxon OID | 3300002059 Open in IMG/M |
| Scaffold ID | SR3_1014842 Open in IMG/M |
| Source Dataset Name | Macroalgal surface ecosystem from Botany Bay, Galicia, Spain - SR3-P2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | J. Craig Venter Institute (JCVI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1625 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface → Macroalgal Surface Microbial Communities |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Vigo, Galicia, Spain | |||||||
| Coordinates | Lat. (o) | 42.52 | Long. (o) | -8.82 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F028441 | Metagenome / Metatranscriptome | 191 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| SR3_10148423 | F028441 | N/A | MHKSKSKMTLKQLIKLENKAKEVWVISPTLHYDTENKDFSEIVSVNLGEKTKYRYIVPATKTVLKNVKAYQKLYNISNEDVDKNFLFLQESDLNPFINESAIYNASTDCIAVTAPATEDSNDVIRFEPATAKEMAKHFKALWRKYKRCNP* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |