NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2236_1098323

Scaffold GOS2236_1098323


Overview

Basic Information
Taxon OID3300001968 Open in IMG/M
Scaffold IDGOS2236_1098323 Open in IMG/M
Source Dataset NameMarine microbial communities from Lake Gatun, Panama - GS020
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1749
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameLake Gatun, Panama
CoordinatesLat. (o)9.164444Long. (o)-79.83611Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003377Metagenome / Metatranscriptome490Y
F060645Metagenome132Y
F062553Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
GOS2236_10983231F003377GAGMTDQAKDTMFAIVEKWGFPTLVAIAVGWVLRHDVLLPLVEEHRTFVRSLSETQREISQAVSEQTRLLYALQPRVAGDGKPDAR
GOS2236_10983232F062553GGAMTLDELQAHVWEQLPTVPRTLGGRRIVNRIVSRAVRGWPIPVLEQCDAGETQVVAKHYTKTVERAVKHEYGMGILLTLVLSALVSEVVKILVRWWLERQENREAMRAIASEIGHHD*
GOS2236_10983233F060645GGGGGMRWILTFMLMLVGCVATLPGDDSLTADLAAETARMVVQLRQQIPPTPAPPSDGKCTNCNGRGYVGDGTVKVKCQPCDGTGKAK*
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