Scaffold RCM26_1040286

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold RCM26_1040286

Scaffold RCM26_1040286

Overview

Basic Information
Taxon OID	3300001849 Open in IMG/M
Scaffold ID	RCM26_1040286 Open in IMG/M
Source Dataset Name	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM26, ROCA_DNA190_2.0um_MCP-N_C_2b
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2448
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location Name	Afu?, Para, Brazil
Coordinates	Lat. (^o)	-0.083883	Long. (^o)	-51.051417	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019426	Metagenome	229	Y
F041564	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
RCM26_10402861	F041564	GAGG	MEYDPSDERHEEIMEYLISEEAAILDGYDEDGEPIYRFDMDVLEEVMPDLYQALIDEMDQELIDLFQRGLIDVSYDEELNAHMTVTEEGREALIRAGFDLDDSEEDDF*
RCM26_10402869	F019426	GGA	MYFRKEIMRVLVFGSKDYTDYNEFIRQMTVLIDDRKHWNPDDKEYIFIHKGMRGAEDMVTEYIGKVEKMLRHNGYKIKEELXXXXXXXXXXXIESIPDFALVFGDSPRNRQSIKLLETYEIPFRYVK*

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