| Basic Information | |
|---|---|
| Taxon OID | 3300001832 Open in IMG/M |
| Scaffold ID | ACM6_1028244 Open in IMG/M |
| Source Dataset Name | Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM6, ROCA_DNA131_0.2um_27b |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 705 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Amazon River plume to Atlantic Ocean | |||||||
| Coordinates | Lat. (o) | 12.4145 | Long. (o) | -52.2197 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011410 | Metagenome | 291 | Y |
| F015532 | Metagenome / Metatranscriptome | 254 | Y |
| F023621 | Metagenome | 209 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| ACM6_10282441 | F015532 | AGGAG | MTLIKENRGVRKNIPDRMMSATFTLPIDGRRVVGILDYTASDTGLTPMAFWVKLKPTDSYLD |
| ACM6_10282442 | F011410 | GAGG | MKDLRIKLEWSTSDLLVWVILAISLGLMIVNIVTMYNMYSIIETMWLEIQQVKETNISLYQFIEEHRNDFD* |
| ACM6_10282443 | F023621 | AGGGGG | MDEKWRNDMSLMEKRIENIMKVMKKAKDYDMKVIWNNKLQQLFDRREAKAYERLEDQARMVH* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |