NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI24529J20061_107471

Scaffold JGI24529J20061_107471


Overview

Basic Information
Taxon OID3300001727 Open in IMG/M
Scaffold IDJGI24529J20061_107471 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)550
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.567Long. (o)-138.6676Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000319Metagenome / Metatranscriptome1307Y
F049041Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
JGI24529J20061_1074712F049041GAGGMNEEEMKIIKSIVALNKIVDKLEQRISTLEKVIGKLQLRLGDVVLYIDKKAEQDE*
JGI24529J20061_1074713F000319GAGGMIKDLSLIILGVIISGAYFYWEDYKNKKEIKKQERLNQIK*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.