NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24529J20061_107190

Scaffold JGI24529J20061_107190


Overview

Basic Information
Taxon OID3300001727 Open in IMG/M
Scaffold IDJGI24529J20061_107190 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)560
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.567Long. (o)-138.6676Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020789Metagenome222N
F049041Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
JGI24529J20061_1071901F049041GAGMGDEEIKTLYNIVDKLEKRIFLLEKVIGKLQLRLGDVVLYIDKKAEQDE
JGI24529J20061_1071903F020789N/AMIGLSLNKYRRNNMANNTNKYFTWYVKSRDKMCTFLGADEFDGFISRQWTDRNGNECYNFWDIKAQHPRTAVNCKWRNA*

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