NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GBIDBA_10011572

Scaffold GBIDBA_10011572


Overview

Basic Information
Taxon OID3300001683 Open in IMG/M
Scaffold IDGBIDBA_10011572 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4815
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location
Location NameGuyams Basin, Gulf of California, Pacific Ocean
CoordinatesLat. (o)27.015833Long. (o)-111.425Alt. (m)Depth (m)1993
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000245Metagenome / Metatranscriptome1468Y
F072442Metagenome / Metatranscriptome121Y
F090860Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
GBIDBA_100115721F090860N/AMKSFLQHLKEEVAWQQSTSKMIFDFSQIGQMKIPLSSKMLSWIFNVQLPRVTVFHVTSGIGFEKLKRLQKKKASISAFFNMSADYIDQGIKTAGGVVAELDANILMSSKNDILSMPDKAGRRWVELHNIDTDEK
GBIDBA_100115723F000245GAGGMKTFKEYKLDDKLDKLVSDEIKKRKLAKHPVNATDDIKMRRGKPTFKFPSPNSDMVIYVWLRKMTPSKGQPKGMMAFNYQLEDK*
GBIDBA_100115724F072442N/AMKTFKEFFQLGVTKPSKFDIQNYLDHLGTRLMSIKDIIKYIEKHFKNIKNLKLDGLGRKVLSFEEFQEEKDENI*
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