NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI24005J15628_10016956

Scaffold JGI24005J15628_10016956


Overview

Basic Information
Taxon OID3300001589 Open in IMG/M
Scaffold IDJGI24005J15628_10016956 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3222
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000613Metagenome / Metatranscriptome985Y
F003678Metagenome / Metatranscriptome474Y
F106095Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
JGI24005J15628_100169562F000613AGGAGMPLVKKRLSIAAGATSDQVLAGTTYEYVDPNTRIVVAAAVDTVGSSTADTTMDFNVNNAEFSKNTSVSAIVTGEPFGWNGNYVMNDMVTQGAVRNRPVITFTNGTSATRTVDVAVFIGG*
JGI24005J15628_100169563F106095GGTGGMLDRLIKNIVPAAIGYVTGGATGSFRAFAESDRAQVKKKQDKQRAEQFRIDQQQLRNNDMEFRDTDILGRSTGGIIQQPSRTVNAGFGSGFGNFLSDVGQNILNPISSVFSQVRPFLTQQSSGQPAIATRTTLGGQESQQSGTNQAFLGGGANLLGQAARFLRTPAGSIGTGLLTGIGGSMLGSQQGGMRITRKMKSQYRTVLNLNQGNISLASDMLGVSEDMFIMVLLKRFRNDGPVVTKAALRKTKTTVRRLKSMCDMYDSLRPTATRRKSPMKRASTTLISNK*
JGI24005J15628_100169564F003678N/AMDQFLLYACGISAILSLIMCFYACMRVGQFINASKGLDWDAVANITGDLATTKKTIQTLNNRLNGMHSPKLADQELMLQLMQKQQNTPSNGHMKNVGG*
JGI24005J15628_100169567F000613N/AAGATSDQVLAGTTYEYVDPNTRIVVAAAVDTVGSSTADTTMDFNVNNAEFSKNTSVSAIVTGEPFGWNGNYVMNDMVTQGAVRNRPVITFTNGTSATRTVDVAVFIGG*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.