NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24003J15210_10005225

Scaffold JGI24003J15210_10005225


Overview

Basic Information
Taxon OID3300001460 Open in IMG/M
Scaffold IDJGI24003J15210_10005225 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5532
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042623Metagenome / Metatranscriptome158N
F051535Metagenome / Metatranscriptome144N
F098202Metagenome104Y
F098206Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
JGI24003J15210_1000522512F098202GAGGVQNEQVKLTTTDNVMVFITAIFLYIHVKQLLVSGSAFMLSALLGVWISMTIFDMYGRWRIKTR*
JGI24003J15210_1000522516F042623N/AMELLAEYCRVVKLDEGYAHAKALYLPLGKIDSVVNWCKQELSPGWKWQIITSSCPTTPGAYAFFFNVESDFFAFLLKFG*
JGI24003J15210_100052255F098206GGAGMNDIVLEIDELEEVVNRLKAVDKPEAFLAIRTIDVIIERKRSQLEAFEKTAYET*
JGI24003J15210_100052256F051535N/AMKLDFYLKWTATSILIVGCFINSAFPDWYPVGPILLSVGGVVWXIVSCMWREWSLIVTNSVMTAVGLIGMAYYYLS*
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