NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24006J15134_10032629

Scaffold JGI24006J15134_10032629


Overview

Basic Information
Taxon OID3300001450 Open in IMG/M
Scaffold IDJGI24006J15134_10032629 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2268
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006892Metagenome362Y
F015659Metagenome253Y
F016879Metagenome244Y
F020445Metagenome / Metatranscriptome224N

Sequences

Protein IDFamilyRBSSequence
JGI24006J15134_100326292F016879AGGAGMSVNKESFFEASFKTIEKFDSAEVASAKLNVSEDAALEIIDIKLNKSLIKTNNDKEHENATKQHSKIVPEIEQSS*
JGI24006J15134_100326295F020445AGGAMSDYDNSAALWKRQPRDADVAGKKYPHYNGNITVGGKKMNLAAWLNTEKTKEGQPDISLKISEIVAKEDAPF*
JGI24006J15134_100326296F015659N/AMKERTLRDAIQQFRNNIVDSDYAKLGAKGNYLTVGYRIRFVRDYFGERMSIQTDSTELANGSHKFRANIYIDDKLVSVGESKQMKNSDKEFEKQQSVSIGRSLSILGFMGDEIATAEEMEDFLKPQKKVVKDKTFENGHKVNYPKDEPEEEKKIKPKLSIEQMANDWIDVLKKTATHSVSVGKFEQNLNPLRKEYINELQTIYTDLIQQQRIDTAYISLQKQITNRKQ*
JGI24006J15134_100326297F006892AGGALRERIRDLENINEEHRKKNGQLRQEIQDKDKIIKELTEKINNPTKRMREQGEI*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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