NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24006J15134_10028215

Scaffold JGI24006J15134_10028215


Overview

Basic Information
Taxon OID3300001450 Open in IMG/M
Scaffold IDJGI24006J15134_10028215 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2493
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Acidiferrobacterales → Acidiferrobacteraceae → Acidiferrobacter → unclassified Acidiferrobacter → Acidiferrobacter sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026158Metagenome199Y
F047368Metagenome150N
F050008Metagenome146N
F052258Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
JGI24006J15134_100282151F047368AGGAMPNKCGAIKHAHTADEALKHLAVGNKSKGYKLKRSGVSIEVIAIKKLPHTL*
JGI24006J15134_100282152F026158AGAAGGMLHISSTSESKASAVQCIEGFRDKMEMLMKAGDILDHCTGGRSTRQETADARARSLKIWKETGCNLSEAAEQGGADRGSFRIWLIKEGYHAARPYCKE*
JGI24006J15134_100282153F052258N/AMKKTKEQIANEHKLVNSEREEEAAMVLFACILGGVILIVLAIAMG*
JGI24006J15134_100282155F050008AGGMSLVNMTETQRELVLDLAEDFAPFVKKVESGAALTRNHYGAYGSMISKLSKGNRKLALVFSYALMMAGANGQGISDAMSAFFPE*
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