NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24006J15134_10013498

Scaffold JGI24006J15134_10013498


Overview

Basic Information
Taxon OID3300001450 Open in IMG/M
Scaffold IDJGI24006J15134_10013498 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3921
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036312Metagenome170Y
F042344Metagenome158Y
F076108Metagenome118N
F079336Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
JGI24006J15134_1001349811F079336N/AMEDILRSEILTAEKRIIVLESTIETYKNIVDAMEQRIELMEENHKTDIKLNYTKNTEL*
JGI24006J15134_100134982F042344N/AMKRLFKDGIVTTMMGLTILTVAVSLYISKAHTETEAGAVAALGLLLLRSKDSLIGLNRK*
JGI24006J15134_100134985F076108N/AMTRIELSDDEIEYSTYFPIQDPHDIMYSFEEMVRMYTNADLEVDSYILERAKEIKIKNSN
JGI24006J15134_100134989F036312N/AMKRKLTHSLCEMQKVNKELYEVFTTDFWDNGTHTVKDISHHATEREAIEQKLINKHKNENK*
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