NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24006J15134_10009308

Scaffold JGI24006J15134_10009308


Overview

Basic Information
Taxon OID3300001450 Open in IMG/M
Scaffold IDJGI24006J15134_10009308 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4898
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016994Metagenome / Metatranscriptome243N
F022908Metagenome / Metatranscriptome212Y
F025320Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
JGI24006J15134_100093082F016994AGGAGGMAITENNTTFVAANEELLGKQLEFITIDAGEELANHLLKNETLNAIENTVRVYGNIVGAGPLFDTNASKTYIVEGTDMFVGAPASAGGSFTFTESGADGSSVGTLLAALKALGTVDGIDLNDSGTTAKIENLEI*
JGI24006J15134_100093084F025320AGGAGMTTKINPTKANTTDHLSGKTITAVTVDFAVNGTNFASTEMGPLGAVQAAIATMTQEATPIIITKLRSDGSNDGQVFDMVFEGEFGTDTYDGSNSEAFAAYLQTVIRLLTSVGAGSVNLNSATVVAATAASF*
JGI24006J15134_100093085F022908N/AMPTHLDEAIKIIVGPESQLRDKTPRIYAMPEKEHMPKQFTNLKRMRFLNHDVSAGRNIKRWLWRDYSPEIILQQPPFNKYEDQSEIFTLIRKPDDRWWSGIKDMFYFMPWYTWWTNEQVMKQWPHFTRSTLRLHDVMEEVKPQHLIKCDDGLNDRMIKFAKEHGLLCYGNLPYEKALRHTKQDIKKLEDTGVRELKAWLRKNPDRQKQLDDYLEQDWQYWEQVEYQD*
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