NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24006J15134_10004604

Scaffold JGI24006J15134_10004604


Overview

Basic Information
Taxon OID3300001450 Open in IMG/M
Scaffold IDJGI24006J15134_10004604 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7259
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000464Metagenome / Metatranscriptome1105Y
F002093Metagenome / Metatranscriptome594Y
F002602Metagenome / Metatranscriptome544Y
F049044Metagenome / Metatranscriptome147N

Sequences

Protein IDFamilyRBSSequence
JGI24006J15134_1000460411F002602AGCAGGVNNSDQLKALTVAIEEKDNQIRMLLAQQGNHEVQIADYRQIVQELSEKLKRYENKYGTVFKPARK*
JGI24006J15134_100046042F002093AGGAGMAYDSSLPAGGPGNFVSPNTAHEADGVAVDFITVDYINGMDGEVTHPNASAATAGLQLSMEAIQNQGVNILGKGVLSNSNTEQTYMVRRDSLDTISSTTTVAAIQAAVRLLNAGTPDKVTATISSATAADRDMGDTSVGA*
JGI24006J15134_100046043F049044AGGAGGMPIAKNNFSLNQNYETQGVDVTLLTVDFIVDVSNEVGDLTSGSTVAGLDMTRHAFAHHGLQILAEGPLVDSDTQKTYMVRTDNLDSLSSTTTVAALQAYIRTLDQSSDSFPGVTADLTGATVTETKIGILTANAVS*
JGI24006J15134_100046049F000464N/AMKLSQQQKIRMYSHHDPDIDIEDEFWPIMGILLSIVGVWTAVIHFIDWVTLDVIPWWTEPFTITPVIFMLVMKENYDSLNPLHWWPMFWGYDAKLPEEDRITIRPLDTERLINEHGGRLNVYIVDYEHIKFRRKKDAVIFGLRYF*
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