NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SWIR1_1016497

Scaffold SWIR1_1016497


Overview

Basic Information
Taxon OID3300001391 Open in IMG/M
Scaffold IDSWIR1_1016497 Open in IMG/M
Source Dataset NameHydrothermal vent microbial communities from the Southwest Indian Ridge - SWIR1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)993
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vents → Hydrothermal Vent Microbial Communities From The Southwest Indian Ridge

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008223Metagenome / Metatranscriptome337Y

Sequences

Protein IDFamilyRBSSequence
SWIR1_10164972F008223N/AMGIFKKLFGKQAHTPTVTEAVGKIIDRFATATSMGVDREALARYPARQYQVMAFHYGAIDYLSQQHQLDETQTLGVFVIFINTYFTMPITETGSISERLRGFSEKPDERRYMEAGADAFRRWHEQNERRAPLELGEMLNKE*
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