NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12269J14319_10043445

Scaffold JGI12269J14319_10043445


Overview

Basic Information
Taxon OID3300001356 Open in IMG/M
Scaffold IDJGI12269J14319_10043445 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2781
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005983Metagenome / Metatranscriptome384Y
F006433Metagenome / Metatranscriptome373Y
F007657Metagenome / Metatranscriptome347Y

Sequences

Protein IDFamilyRBSSequence
JGI12269J14319_100434451F006433N/AMAETTYRILHREDDSFAVEVVRTGVLPQTAIGFATESDAQGWIAQDKRLWDAVDPFRTQASRKWRGF*
JGI12269J14319_100434454F005983GGAGMQADAKDDGLITYDFEEFCDDYGHPAGRLFTFEVTHHAVTYIYADVIGTVRGSEVVFCLNADDLVLTRKAH*
JGI12269J14319_100434455F007657GAGMNWVTFEVVEGGLVAVPPHHVVAIYDELGAVKLATTAGGVHILKDMTVQRATALVSRAADADATRSS*
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