NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12316J14372_10054575

Scaffold JGI12316J14372_10054575


Overview

Basic Information
Taxon OID3300001341 Open in IMG/M
Scaffold IDJGI12316J14372_10054575 Open in IMG/M
Source Dataset NameMarine cyanobacterial communities from Panama - species 1 Leptolyngbya sp. v3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)877
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Cyanobacterial Communities From Panama, Similar To Oscillatoria Species

Source Dataset Sampling Location
Location NamePanama: Panama City
CoordinatesLat. (o)9.28Long. (o)-79.97Alt. (m)Depth (m)48.85
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F094484Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
JGI12316J14372_100545751F094484GGAGGMKKITLALLLSGLVISAAGPAYAEGRRMLIFAIYGPDGSTGSSATTTVVDFTTQVACREARRAIH
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