NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI10216J12902_103883974

Scaffold JGI10216J12902_103883974


Overview

Basic Information
Taxon OID3300000956 Open in IMG/M
Scaffold IDJGI10216J12902_103883974 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Kansas, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2695
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameKansas, USA
CoordinatesLat. (o)39.214012Long. (o)-96.585283Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028268Metagenome / Metatranscriptome192Y
F052708Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
JGI10216J12902_1038839742F052708N/AVGDASSTNAVSIKLPVDGYVNVARLVTAGFGSQLEFGFEAIDDLQLAIELALRSVPVHDGHATVSLASDPEGLTVTVSGSEGKPIDPRFPDGGEGLDLLSCLGRLVDSVDVVAGAAPAVVLRKNRSTAEVVPGV*
JGI10216J12902_1038839744F028268N/AMSFGTVVPLFVFLGGYALQVTFVGEPIARRVYRFGIWTSTLGQDPPGKDKVDAKMSAGGKRPFFERVRPYLPPGWLERRGRPISTPVRVIWFVLVGWWLGAVWVVISWSPFLLPYPLFDTVAGLLREVPSTMTLALPDRARAA*
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