NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI10215J12807_1085568

Scaffold JGI10215J12807_1085568


Overview

Basic Information
Taxon OID3300000881 Open in IMG/M
Scaffold IDJGI10215J12807_1085568 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Wisconsin Restored Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1687
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameWisconsin, USA
CoordinatesLat. (o)43.303611Long. (o)-89.332778Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034609Metagenome174N
F061031Metagenome132N

Sequences

Protein IDFamilyRBSSequence
JGI10215J12807_10855682F034609GGAGMQEHVQDDFDWVGAQAKCNAASMFERLRTRVEEDVRRRNGLLGRPDKWTFEFYSEDDVFEVSRLIASGKVGAVVQFERVGRRIHVQGEDIDVDITAIVTVDTTGACRFVVGEAMYSDWELRKMALELLFFEEPEEEE*
JGI10215J12807_10855683F061031N/AVSGLFDVLLFRRGGGDPKLRPGPGASPRPDLWFCPSPGTPDWKTLADPSTFAMLAADCNALQLYQDQLLDAPMPPLGVPRSALPPHGWNTWRAFREWGILSMAADHGLPLVIESPGLKEWSPDPTVYASRIIESARIARALGSAVQAVALDEPWNAGFNIRQPAWTFDQVLAHISEVRRLVHMNEPGIGFGLIEPYPTMTADMLCSSIEAYAPAFFHIDIDYLSVKRSGARDRLRTDLARVAACCRASGVRFGIIIWGYEEDTAETFVRSAHTLLAAIQQEVIRGRLSWPDRLIVQSWSAAAVLGPRLIPPTMPPDGSVSLWGLLRTVRRSL*
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